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Fix parser edgecases

Merged Hugo Beauzée-Luyssen requested to merge chouquette/medialibrary:fixes_various into master

This fixes a couple issues with the parser code:

  • Late completing tasks could trigger an assertion after flushing, we can ignore those
  • The parser uses the FS factories when analyzing content, so ensure it starts those, in case the application hasn't asked for a reload yet.

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